IL_4V5D_201

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4V5D|1|CA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_201 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2687

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V5D|1|CA|U|921
4V5D|1|CA|G|922
4V5D|1|CA|A|923
*
4V5D|1|CA|U|1393
4V5D|1|CA|A|1394
4V5D|1|CA|C|1395
4V5D|1|CA|A|1396

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S RIBOSOMAL PROTEIN S5