IL_4V5D_236

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAG*UGGGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_236 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.3822

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V5D|1|DA|C|287
4V5D|1|DA|C|288
4V5D|1|DA|A|289
4V5D|1|DA|G|290
*
4V5D|1|DA|U|350
4V5D|1|DA|G|351
4V5D|1|DA|G|352
4V5D|1|DA|G|353
4V5D|1|DA|G|354

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains