RNA 3D Hub //

Motif IL_04059.1 Version IL_04059.1 of this group appears in releases 3.77 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_2ZY6_0012ZY60.49671tSH-tHWAphenylalanyl transfer RNAA7U8A9G10*C25G26A27U29cWWtWHntHScWW
2 IL_4WF9_0544WF90.32611Other ILX LSU rRNAC1624U1625A1626G1627*C1461G1462A1463G1465cWWcWW
3 IL_7RQB_0117RQB0.30991tSH-tHW1A LSU rRNAA357U358A359G360*C280G281A282U284cWWtWHtHScWW
4 IL_7RQB_0577RQB0.25881tSH-tHW1A LSU rRNAC1437U1438A1439G1440*C1551G1552A1553G1555cWWtWHtHScWW
5 IL_7MLW_0027MLW0.15442FGuanidine-I riboswitchC7U8A9G10*C51G52A53G56cWWtWHtHScWW
6 IL_5J7L_2975J7L0.15671tSH-tHWDA LSU rRNAC1437U1438A1439U1440*A1551A1552A1553G1555cWWtWHtHScWW
7 IL_5U3G_0015U3G0.16692tSH-tHWBGuanidine-I riboswitchC6U7A8G9*C30G31A32G35cWWtWHtHScWW
8 IL_6CK5_0016CK50.10982tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C45G46A47G50cWWtWHtHScWW
9 IL_6DLR_0016DLR0.00002tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C45A46A47G50cWWtWHtHScWW
10 IL_6DME_0016DME0.14892tSH-tHWAppGpp RiboswitchC11U12A13G14*C40A41A42G45cWWntWWtHScWW
11 IL_5T83_0015T830.13042tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C42A43A44G47cWWtWHtHScWW
12 IL_7A0S_0537A0S0.17991tSH-tHWX LSU rRNAC1451U1452A1453U1454*A1567A1568A1569G1571cWWtWHtHScWW
13 IL_3NDB_0073NDB0.22253tSH-tHWM SRP RNAG223U224A225G226*C192G193A194C198cWWtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAG*CGAGAG2
AUAG*CGAGU1
CUAG*CGAUG1
AUAG*CGAAU1
CUAG*CGAAG1
CUAU*AAAUG1
CUAG*CGAGCG1
CUAG*CAAGUG1
CUAG*CAAGCG1
CUAG*CAAGAG1
CUAU*AAACG1
GUAG*CGAACCC1
Non-Watson-Crick part of the motif
SequenceCounts
UA*GAA2
UA*GAGA2
UA*GAG1
UA*GAU1
UA*AAU1
UA*GAGC1
UA*AAGU1
UA*AAGC1
UA*AAGA1
UA*AAC1
UA*GAACC1

Release history

Release3.773.783.793.803.813.823.833.843.853.86
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusNew id, > 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW (11)
  • Other IL (1)
  • (1)
    • Basepair signature
    cWW-tWH-tHS-cWW
    Heat map statistics
    Min 0.11 | Avg 0.24 | Max 0.58
    Help

    Coloring options:

    IL_2ZY6_001:IL_2ZY6_001 = 0IL_2ZY6_001:IL_4WF9_054 = 0.3846IL_2ZY6_001:IL_7RQB_011 = 0.4552IL_2ZY6_001:IL_7RQB_057 = 0.4978IL_2ZY6_001:IL_7MLW_002 = 0.5172IL_2ZY6_001:IL_5J7L_297 = 0.5177IL_2ZY6_001:IL_5U3G_001 = 0.42IL_2ZY6_001:IL_6CK5_001 = 0.4886IL_2ZY6_001:IL_6DLR_001 = 0.4967IL_2ZY6_001:IL_6DME_001 = 0.5036IL_2ZY6_001:IL_5T83_001 = 0.3514IL_2ZY6_001:IL_7A0S_053 = 0.468IL_2ZY6_001:IL_3NDB_007 = 0.5831IL_4WF9_054:IL_2ZY6_001 = 0.3846IL_4WF9_054:IL_4WF9_054 = 0IL_4WF9_054:IL_7RQB_011 = 0.3225IL_4WF9_054:IL_7RQB_057 = 0.292IL_4WF9_054:IL_7MLW_002 = 0.2911IL_4WF9_054:IL_5J7L_297 = 0.3012IL_4WF9_054:IL_5U3G_001 = 0.3366IL_4WF9_054:IL_6CK5_001 = 0.3361IL_4WF9_054:IL_6DLR_001 = 0.3261IL_4WF9_054:IL_6DME_001 = 0.2961IL_4WF9_054:IL_5T83_001 = 0.3035IL_4WF9_054:IL_7A0S_053 = 0.3291IL_4WF9_054:IL_3NDB_007 = 0.3913IL_7RQB_011:IL_2ZY6_001 = 0.4552IL_7RQB_011:IL_4WF9_054 = 0.3225IL_7RQB_011:IL_7RQB_011 = 0IL_7RQB_011:IL_7RQB_057 = 0.1144IL_7RQB_011:IL_7MLW_002 = 0.2023IL_7RQB_011:IL_5J7L_297 = 0.2098IL_7RQB_011:IL_5U3G_001 = 0.2108IL_7RQB_011:IL_6CK5_001 = 0.3144IL_7RQB_011:IL_6DLR_001 = 0.3099IL_7RQB_011:IL_6DME_001 = 0.3257IL_7RQB_011:IL_5T83_001 = 0.2736IL_7RQB_011:IL_7A0S_053 = 0.2455IL_7RQB_011:IL_3NDB_007 = 0.3334IL_7RQB_057:IL_2ZY6_001 = 0.4978IL_7RQB_057:IL_4WF9_054 = 0.292IL_7RQB_057:IL_7RQB_011 = 0.1144IL_7RQB_057:IL_7RQB_057 = 0IL_7RQB_057:IL_7MLW_002 = 0.1498IL_7RQB_057:IL_5J7L_297 = 0.1588IL_7RQB_057:IL_5U3G_001 = 0.1798IL_7RQB_057:IL_6CK5_001 = 0.2595IL_7RQB_057:IL_6DLR_001 = 0.2588IL_7RQB_057:IL_6DME_001 = 0.2917IL_7RQB_057:IL_5T83_001 = 0.2334IL_7RQB_057:IL_7A0S_053 = 0.2034IL_7RQB_057:IL_3NDB_007 = 0.2962IL_7MLW_002:IL_2ZY6_001 = 0.5172IL_7MLW_002:IL_4WF9_054 = 0.2911IL_7MLW_002:IL_7RQB_011 = 0.2023IL_7MLW_002:IL_7RQB_057 = 0.1498IL_7MLW_002:IL_7MLW_002 = 0IL_7MLW_002:IL_5J7L_297 = 0.114IL_7MLW_002:IL_5U3G_001 = 0.1753IL_7MLW_002:IL_6CK5_001 = 0.1757IL_7MLW_002:IL_6DLR_001 = 0.1544IL_7MLW_002:IL_6DME_001 = 0.1958IL_7MLW_002:IL_5T83_001 = 0.1712IL_7MLW_002:IL_7A0S_053 = 0.177IL_7MLW_002:IL_3NDB_007 = 0.245IL_5J7L_297:IL_2ZY6_001 = 0.5177IL_5J7L_297:IL_4WF9_054 = 0.3012IL_5J7L_297:IL_7RQB_011 = 0.2098IL_5J7L_297:IL_7RQB_057 = 0.1588IL_5J7L_297:IL_7MLW_002 = 0.114IL_5J7L_297:IL_5J7L_297 = 0IL_5J7L_297:IL_5U3G_001 = 0.1134IL_5J7L_297:IL_6CK5_001 = 0.1523IL_5J7L_297:IL_6DLR_001 = 0.1567IL_5J7L_297:IL_6DME_001 = 0.2243IL_5J7L_297:IL_5T83_001 = 0.1897IL_5J7L_297:IL_7A0S_053 = 0.1362IL_5J7L_297:IL_3NDB_007 = 0.2426IL_5U3G_001:IL_2ZY6_001 = 0.42IL_5U3G_001:IL_4WF9_054 = 0.3366IL_5U3G_001:IL_7RQB_011 = 0.2108IL_5U3G_001:IL_7RQB_057 = 0.1798IL_5U3G_001:IL_7MLW_002 = 0.1753IL_5U3G_001:IL_5J7L_297 = 0.1134IL_5U3G_001:IL_5U3G_001 = 0IL_5U3G_001:IL_6CK5_001 = 0.1682IL_5U3G_001:IL_6DLR_001 = 0.1669IL_5U3G_001:IL_6DME_001 = 0.2093IL_5U3G_001:IL_5T83_001 = 0.1603IL_5U3G_001:IL_7A0S_053 = 0.1759IL_5U3G_001:IL_3NDB_007 = 0.2975IL_6CK5_001:IL_2ZY6_001 = 0.4886IL_6CK5_001:IL_4WF9_054 = 0.3361IL_6CK5_001:IL_7RQB_011 = 0.3144IL_6CK5_001:IL_7RQB_057 = 0.2595IL_6CK5_001:IL_7MLW_002 = 0.1757IL_6CK5_001:IL_5J7L_297 = 0.1523IL_6CK5_001:IL_5U3G_001 = 0.1682IL_6CK5_001:IL_6CK5_001 = 0IL_6CK5_001:IL_6DLR_001 = 0.1098IL_6CK5_001:IL_6DME_001 = 0.1961IL_6CK5_001:IL_5T83_001 = 0.2002IL_6CK5_001:IL_7A0S_053 = 0.2096IL_6CK5_001:IL_3NDB_007 = 0.266IL_6DLR_001:IL_2ZY6_001 = 0.4967IL_6DLR_001:IL_4WF9_054 = 0.3261IL_6DLR_001:IL_7RQB_011 = 0.3099IL_6DLR_001:IL_7RQB_057 = 0.2588IL_6DLR_001:IL_7MLW_002 = 0.1544IL_6DLR_001:IL_5J7L_297 = 0.1567IL_6DLR_001:IL_5U3G_001 = 0.1669IL_6DLR_001:IL_6CK5_001 = 0.1098IL_6DLR_001:IL_6DLR_001 = 0IL_6DLR_001:IL_6DME_001 = 0.1489IL_6DLR_001:IL_5T83_001 = 0.1304IL_6DLR_001:IL_7A0S_053 = 0.1799IL_6DLR_001:IL_3NDB_007 = 0.2225IL_6DME_001:IL_2ZY6_001 = 0.5036IL_6DME_001:IL_4WF9_054 = 0.2961IL_6DME_001:IL_7RQB_011 = 0.3257IL_6DME_001:IL_7RQB_057 = 0.2917IL_6DME_001:IL_7MLW_002 = 0.1958IL_6DME_001:IL_5J7L_297 = 0.2243IL_6DME_001:IL_5U3G_001 = 0.2093IL_6DME_001:IL_6CK5_001 = 0.1961IL_6DME_001:IL_6DLR_001 = 0.1489IL_6DME_001:IL_6DME_001 = 0IL_6DME_001:IL_5T83_001 = 0.1754IL_6DME_001:IL_7A0S_053 = 0.2468IL_6DME_001:IL_3NDB_007 = 0.2815IL_5T83_001:IL_2ZY6_001 = 0.3514IL_5T83_001:IL_4WF9_054 = 0.3035IL_5T83_001:IL_7RQB_011 = 0.2736IL_5T83_001:IL_7RQB_057 = 0.2334IL_5T83_001:IL_7MLW_002 = 0.1712IL_5T83_001:IL_5J7L_297 = 0.1897IL_5T83_001:IL_5U3G_001 = 0.1603IL_5T83_001:IL_6CK5_001 = 0.2002IL_5T83_001:IL_6DLR_001 = 0.1304IL_5T83_001:IL_6DME_001 = 0.1754IL_5T83_001:IL_5T83_001 = 0IL_5T83_001:IL_7A0S_053 = 0.2011IL_5T83_001:IL_3NDB_007 = 0.2646IL_7A0S_053:IL_2ZY6_001 = 0.468IL_7A0S_053:IL_4WF9_054 = 0.3291IL_7A0S_053:IL_7RQB_011 = 0.2455IL_7A0S_053:IL_7RQB_057 = 0.2034IL_7A0S_053:IL_7MLW_002 = 0.177IL_7A0S_053:IL_5J7L_297 = 0.1362IL_7A0S_053:IL_5U3G_001 = 0.1759IL_7A0S_053:IL_6CK5_001 = 0.2096IL_7A0S_053:IL_6DLR_001 = 0.1799IL_7A0S_053:IL_6DME_001 = 0.2468IL_7A0S_053:IL_5T83_001 = 0.2011IL_7A0S_053:IL_7A0S_053 = 0IL_7A0S_053:IL_3NDB_007 = 0.2181IL_3NDB_007:IL_2ZY6_001 = 0.5831IL_3NDB_007:IL_4WF9_054 = 0.3913IL_3NDB_007:IL_7RQB_011 = 0.3334IL_3NDB_007:IL_7RQB_057 = 0.2962IL_3NDB_007:IL_7MLW_002 = 0.245IL_3NDB_007:IL_5J7L_297 = 0.2426IL_3NDB_007:IL_5U3G_001 = 0.2975IL_3NDB_007:IL_6CK5_001 = 0.266IL_3NDB_007:IL_6DLR_001 = 0.2225IL_3NDB_007:IL_6DME_001 = 0.2815IL_3NDB_007:IL_5T83_001 = 0.2646IL_3NDB_007:IL_7A0S_053 = 0.2181IL_3NDB_007:IL_3NDB_007 = 0IL_2ZY6_001IL_4WF9_054IL_7RQB_011IL_7RQB_057IL_7MLW_002IL_5J7L_297IL_5U3G_001IL_6CK5_001IL_6DLR_001IL_6DME_001IL_5T83_001IL_7A0S_053IL_3NDB_007Discrepancy0.000.100.200.300.400.50
    Copyright 2025 BGSU RNA group. Page generated in 0.4766 s