Motif IL_04059.1 Version IL_04059.1 of this group appears in releases 3.77 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZY6_001 | 2ZY6 | 0.4967 | 1 | tSH-tHW | A | phenylalanyl transfer RNA | A | 7 | U | 8 | A | 9 | G | 10 | * | C | 25 | G | 26 | A | 27 | U | 29 | cWW | tWH | ntHS | cWW |
| 2 | IL_4WF9_054 | 4WF9 | 0.3261 | 1 | Other IL | X | LSU rRNA | C | 1624 | U | 1625 | A | 1626 | G | 1627 | * | C | 1461 | G | 1462 | A | 1463 | G | 1465 | cWW | cWW | ||
| 3 | IL_7RQB_011 | 7RQB | 0.3099 | 1 | tSH-tHW | 1A | LSU rRNA | A | 357 | U | 358 | A | 359 | G | 360 | * | C | 280 | G | 281 | A | 282 | U | 284 | cWW | tWH | tHS | cWW |
| 4 | IL_7RQB_057 | 7RQB | 0.2588 | 1 | tSH-tHW | 1A | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | G | 1440 | * | C | 1551 | G | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW |
| 5 | IL_7MLW_002 | 7MLW | 0.1544 | 2 | F | Guanidine-I riboswitch | C | 7 | U | 8 | A | 9 | G | 10 | * | C | 51 | G | 52 | A | 53 | G | 56 | cWW | tWH | tHS | cWW | |
| 6 | IL_5J7L_297 | 5J7L | 0.1567 | 1 | tSH-tHW | DA | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | U | 1440 | * | A | 1551 | A | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW |
| 7 | IL_5U3G_001 | 5U3G | 0.1669 | 2 | tSH-tHW | B | Guanidine-I riboswitch | C | 6 | U | 7 | A | 8 | G | 9 | * | C | 30 | G | 31 | A | 32 | G | 35 | cWW | tWH | tHS | cWW |
| 8 | IL_6CK5_001 | 6CK5 | 0.1098 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 12 | U | 13 | A | 14 | G | 15 | * | C | 45 | G | 46 | A | 47 | G | 50 | cWW | tWH | tHS | cWW |
| 9 | IL_6DLR_001 | 6DLR | 0.0000 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 12 | U | 13 | A | 14 | G | 15 | * | C | 45 | A | 46 | A | 47 | G | 50 | cWW | tWH | tHS | cWW |
| 10 | IL_6DME_001 | 6DME | 0.1489 | 2 | tSH-tHW | A | ppGpp Riboswitch | C | 11 | U | 12 | A | 13 | G | 14 | * | C | 40 | A | 41 | A | 42 | G | 45 | cWW | ntWW | tHS | cWW |
| 11 | IL_5T83_001 | 5T83 | 0.1304 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 12 | U | 13 | A | 14 | G | 15 | * | C | 42 | A | 43 | A | 44 | G | 47 | cWW | tWH | tHS | cWW |
| 12 | IL_7A0S_053 | 7A0S | 0.1799 | 1 | tSH-tHW | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
| 13 | IL_3NDB_007 | 3NDB | 0.2225 | 3 | tSH-tHW | M | SRP RNA | G | 223 | U | 224 | A | 225 | G | 226 | * | C | 192 | G | 193 | A | 194 | C | 198 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CGAGAG | 2 |
| AUAG*CGAGU | 1 |
| CUAG*CGAUG | 1 |
| AUAG*CGAAU | 1 |
| CUAG*CGAAG | 1 |
| CUAU*AAAUG | 1 |
| CUAG*CGAGCG | 1 |
| CUAG*CAAGUG | 1 |
| CUAG*CAAGCG | 1 |
| CUAG*CAAGAG | 1 |
| CUAU*AAACG | 1 |
| GUAG*CGAACCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA | 2 |
| UA*GAGA | 2 |
| UA*GAG | 1 |
| UA*GAU | 1 |
| UA*AAU | 1 |
| UA*GAGC | 1 |
| UA*AAGU | 1 |
| UA*AAGC | 1 |
| UA*AAGA | 1 |
| UA*AAC | 1 |
| UA*GAACC | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW (11)
- Other IL (1)
- (1)
- Basepair signature
- cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.24 | Max 0.58
Coloring options: