IL_4V5D_238

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V5D|1|DA|U|504, 4V5D|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_238 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0745

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V5D|1|DA|G|481
4V5D|1|DA|A|482
4V5D|1|DA|A|483
4V5D|1|DA|C|484
*
4V5D|1|DA|G|496
4V5D|1|DA|A|497
4V5D|1|DA|G|498
4V5D|1|DA|U|499
4V5D|1|DA|G|500
4V5D|1|DA|A|501
4V5D|1|DA|A|502
4V5D|1|DA|A|503
4V5D|1|DA|U|504
4V5D|1|DA|A|505
4V5D|1|DA|G|506
4V5D|1|DA|A|507
4V5D|1|DA|G|508
4V5D|1|DA|C|509

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DW

50S RIBOSOMAL PROTEIN L22

Chain DY

50S RIBOSOMAL PROTEIN L24