IL_4V5D_240

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_240 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0672

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4V5D|1|DA|U|606
4V5D|1|DA|U|607
4V5D|1|DA|A|608
4V5D|1|DA|A|609
4V5D|1|DA|G|610
*
4V5D|1|DA|C|618
4V5D|1|DA|G|619
4V5D|1|DA|G|620
4V5D|1|DA|A|621
4V5D|1|DA|G|622

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15