IL_4V5D_271

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

4V5D|1|DA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_271 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1061

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V5D|1|DA|G|1319
4V5D|1|DA|C|1320
4V5D|1|DA|A|1321
4V5D|1|DA|A|1322
4V5D|1|DA|U|1323
*
4V5D|1|DA|A|1331
4V5D|1|DA|G|1332
4V5D|1|DA|C|1333

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DW

50S RIBOSOMAL PROTEIN L22