3D structure

PDB id
4V5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UG*CACAA
Length
7 nucleotides
Bulged bases
4V5D|1|DA|C|1584
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5D_274 not in the Motif Atlas
Homologous match to IL_7RQB_054
Geometric discrepancy: 0.2695
The information below is about IL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_67474.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

4V5D|1|DA|U|1415
4V5D|1|DA|G|1416
*
4V5D|1|DA|C|1582
4V5D|1|DA|A|1583
4V5D|1|DA|C|1584
4V5D|1|DA|A|1586
4V5D|1|DA|A|1587

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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