IL_4V5D_274

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

4V5D|1|DA|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_274 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.2695

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V5D|1|DA|U|1415
4V5D|1|DA|G|1416
*
4V5D|1|DA|C|1582
4V5D|1|DA|A|1583
4V5D|1|DA|C|1584
4V5D|1|DA|A|1586
4V5D|1|DA|A|1587

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains