IL_4V5D_302

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_302 not in the Motif Atlas

Geometric match to IL_5VCI_001

Geometric discrepancy: 0.1417

The information below is about IL_5VCI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V5D|1|DA|C|2108
4V5D|1|DA|U|2109
4V5D|1|DA|G|2110
*
4V5D|1|DA|C|2179
4V5D|1|DA|U|2180
4V5D|1|DA|G|2181

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DC

50S RIBOSOMAL PROTEIN L1