IL_4V5D_303

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V5D|1|DA|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_303 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.2904

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V5D|1|DA|G|2110
4V5D|1|DA|C|2111
4V5D|1|DA|G|2112
4V5D|1|DA|U|2113
4V5D|1|DA|A|2114
4V5D|1|DA|G|2115
4V5D|1|DA|G|2116
4V5D|1|DA|A|2117
4V5D|1|DA|U|2118
4V5D|1|DA|A|2119
4V5D|1|DA|G|2120
*
4V5D|1|DA|C|2178
4V5D|1|DA|C|2179

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DC

50S RIBOSOMAL PROTEIN L1