IL_4V5D_335

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_335 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.1616

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5D|1|AA|G|993
4V5D|1|AA|A|994
4V5D|1|AA|C|995
4V5D|1|AA|A|996
4V5D|1|AA|U|997
*
4V5D|1|AA|A|1044
4V5D|1|AA|C|1045

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S14