IL_4V5D_339

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

4V5D|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_339 not in the Motif Atlas

Geometric match to IL_4P3U_001

Geometric discrepancy: 0.2991

The information below is about IL_4P3U_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5D|1|BA|G|879
4V5D|1|BA|G|880
4V5D|1|BA|G|881
*
4V5D|1|BA|U|895
4V5D|1|BA|A|896
4V5D|1|BA|C|897
4V5D|1|BA|C|898

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain BZ

50S RIBOSOMAL PROTEIN L25