IL_4V5E_009

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCCGC*GUGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_009 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3299

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V5E|1|AA|C|186
4V5E|1|AA|C|187
4V5E|1|AA|C|188
4V5E|1|AA|G|189
4V5E|1|AA|C|189|||A
*
4V5E|1|AA|G|189|||J
4V5E|1|AA|U|189|||K
4V5E|1|AA|G|189|||L
4V5E|1|AA|U|190
4V5E|1|AA|G|191

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20