IL_4V5E_053

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V5E|1|AA|A|1492, 4V5E|1|AA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_053 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.1778

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V5E|1|AA|C|1407
4V5E|1|AA|A|1408
4V5E|1|AA|C|1409
*
4V5E|1|AA|G|1491
4V5E|1|AA|A|1492
4V5E|1|AA|A|1493
4V5E|1|AA|G|1494

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AX

MRNA

Chain AY

PEPTIDE CHAIN RELEASE FACTOR 2

Chain BA

Large subunit ribosomal RNA; LSU rRNA