IL_4V5E_102

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V5E|1|BA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_102 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.198

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4V5E|1|BA|G|1087
4V5E|1|BA|A|1088
4V5E|1|BA|G|1089
4V5E|1|BA|U|1090
4V5E|1|BA|G|1091
*
4V5E|1|BA|C|1100
4V5E|1|BA|U|1101
4V5E|1|BA|C|1102

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BK

50S RIBOSOMAL PROTEIN L11