IL_4V5E_188

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_188 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1344

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V5E|1|CA|G|450
4V5E|1|CA|A|451
4V5E|1|CA|A|452
4V5E|1|CA|A|453
4V5E|1|CA|C|454
4V5E|1|CA|C|455
*
4V5E|1|CA|G|476
4V5E|1|CA|A|477
4V5E|1|CA|C|479
4V5E|1|CA|U|480
4V5E|1|CA|G|481
4V5E|1|CA|A|482
4V5E|1|CA|C|483

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16