IL_4V5E_242
3D structure
- PDB id
- 4V5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 4V5E|1|DA|U|504, 4V5E|1|DA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5E_242 not in the Motif Atlas
- Homologous match to IL_7RQB_014
- Geometric discrepancy: 0.0631
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V5E|1|DA|G|481
4V5E|1|DA|A|482
4V5E|1|DA|A|483
4V5E|1|DA|C|484
*
4V5E|1|DA|G|496
4V5E|1|DA|A|497
4V5E|1|DA|G|498
4V5E|1|DA|U|499
4V5E|1|DA|G|500
4V5E|1|DA|A|501
4V5E|1|DA|A|502
4V5E|1|DA|A|503
4V5E|1|DA|U|504
4V5E|1|DA|A|505
4V5E|1|DA|G|506
4V5E|1|DA|A|507
4V5E|1|DA|G|508
4V5E|1|DA|C|509
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain DW
- 50S RIBOSOMAL PROTEIN L22
- Chain DY
- 50S RIBOSOMAL PROTEIN L24
Coloring options: