IL_4V5E_285

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5E_285 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0903

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V5E|1|DA|C|1437
4V5E|1|DA|U|1438
4V5E|1|DA|A|1439
4V5E|1|DA|G|1440
*
4V5E|1|DA|C|1551
4V5E|1|DA|G|1552
4V5E|1|DA|A|1553
4V5E|1|DA|A|1554
4V5E|1|DA|G|1555

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains