IL_4V5F_003

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4V5F|1|AA|C|48, 4V5F|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_003 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.1188

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5F|1|AA|C|47
4V5F|1|AA|C|48
4V5F|1|AA|U|49
4V5F|1|AA|A|50
4V5F|1|AA|A|51
4V5F|1|AA|G|52
*
4V5F|1|AA|U|359
4V5F|1|AA|A|360
4V5F|1|AA|G|361

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AY

ELONGATION FACTOR G