IL_4V5F_041

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4V5F|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_041 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3054

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V5F|1|AA|C|1051
4V5F|1|AA|U|1052
4V5F|1|AA|G|1053
4V5F|1|AA|C|1054
4V5F|1|AA|A|1055
4V5F|1|AA|U|1056
*
4V5F|1|AA|A|1204
4V5F|1|AA|U|1205
4V5F|1|AA|G|1206
4V5F|1|AA|G|1207

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AY

ELONGATION FACTOR G