IL_4V5F_099

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

4V5F|1|BA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_099 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.2032

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5F|1|BA|G|1059
4V5F|1|BA|U|1060
4V5F|1|BA|U|1061
4V5F|1|BA|G|1062
4V5F|1|BA|G|1063
*
4V5F|1|BA|C|1075
4V5F|1|BA|C|1076
4V5F|1|BA|A|1077
4V5F|1|BA|U|1078
4V5F|1|BA|C|1079

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BK

50S RIBOSOMAL PROTEIN L11

Chain BQ

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L25