IL_4V5F_254

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_254 not in the Motif Atlas

Geometric match to IL_4V9F_033

Geometric discrepancy: 0.1222

The information below is about IL_4V9F_033

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V5F|1|DA|U|858
4V5F|1|DA|G|859
4V5F|1|DA|U|860
4V5F|1|DA|A|861
4V5F|1|DA|G|862
*
4V5F|1|DA|C|915
4V5F|1|DA|G|916
4V5F|1|DA|A|917
4V5F|1|DA|A|918
4V5F|1|DA|G|919

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D0

50S RIBOSOMAL PROTEIN L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DQ

50S RIBOSOMAL PROTEIN L16