IL_4V5F_292

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V5F|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_292 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.0947

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4V5F|1|DA|A|1669
4V5F|1|DA|C|1670
4V5F|1|DA|U|1671
4V5F|1|DA|C|1672
4V5F|1|DA|U|1673
4V5F|1|DA|G|1674
*
4V5F|1|DA|C|1990
4V5F|1|DA|U|1991
4V5F|1|DA|G|1992
4V5F|1|DA|U|1993

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DO

50S RIBOSOMAL PROTEIN L14