IL_4V5F_358

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGG*UCCC

Length

7 nucleotides

Bulged bases

4V5F|1|BA|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5F_358 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3688

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

4V5F|1|BA|G|2837
4V5F|1|BA|G|2838
4V5F|1|BA|G|2839
*
4V5F|1|BA|U|2878
4V5F|1|BA|C|2879
4V5F|1|BA|C|2880
4V5F|1|BA|C|2881

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BT

50S RIBOSOMAL PROTEIN L19