3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGGCCAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5G_018 not in the Motif Atlas
Homologous match to IL_4LFB_020
Geometric discrepancy: 0.1664
The information below is about IL_4LFB_020
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

4V5G|1|AA|C|504
4V5G|1|AA|G|505
4V5G|1|AA|G|506
4V5G|1|AA|C|507
4V5G|1|AA|C|508
4V5G|1|AA|A|509
4V5G|1|AA|A|510
4V5G|1|AA|C|511
*
4V5G|1|AA|G|540
4V5G|1|AA|G|541

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AD
30S RIBOSOMAL PROTEIN S4
Chain AL
30S RIBOSOMAL PROTEIN S12

Coloring options:


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