3D structure

PDB id
4V5G (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5G_031 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0945
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4V5G|1|AA|G|887
4V5G|1|AA|G|888
4V5G|1|AA|A|889
4V5G|1|AA|G|890
4V5G|1|AA|U|891
4V5G|1|AA|A|892
4V5G|1|AA|C|893
4V5G|1|AA|G|894
*
4V5G|1|AA|U|905
4V5G|1|AA|G|906
4V5G|1|AA|A|907
4V5G|1|AA|A|908
4V5G|1|AA|A|909
4V5G|1|AA|C|910

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AL
30S RIBOSOMAL PROTEIN S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2277 s