IL_4V5G_135

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V5G|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_135 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.3119

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V5G|1|BA|C|2129
4V5G|1|BA|U|2130
4V5G|1|BA|G|2131
4V5G|1|BA|U|2132
4V5G|1|BA|G|2133
4V5G|1|BA|A|2134
4V5G|1|BA|A|2135
4V5G|1|BA|C|2136
*
4V5G|1|BA|G|2155
4V5G|1|BA|G|2156
4V5G|1|BA|G|2157
4V5G|1|BA|A|2158
4V5G|1|BA|G|2159

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BC

50S RIBOSOMAL PROTEIN L1