IL_4V5G_211

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_211 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.1791

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4V5G|1|CA|G|1405
4V5G|1|CA|U|1406
4V5G|1|CA|C|1407
*
4V5G|1|CA|G|1494
4V5G|1|CA|U|1495
4V5G|1|CA|C|1496

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CX

MRNA

Chain CY

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA