IL_4V5G_248

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5G_248 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1893

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V5G|1|DA|C|1004
4V5G|1|DA|C|1005
4V5G|1|DA|C|1006
4V5G|1|DA|C|1007
4V5G|1|DA|C|1008
4V5G|1|DA|A|1009
4V5G|1|DA|A|1010
4V5G|1|DA|G|1011
*
4V5G|1|DA|C|1150
4V5G|1|DA|G|1151

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DN

50S RIBOSOMAL PROTEIN L13

Chain DU

50S RIBOSOMAL PROTEIN L20