IL_4V5H_048

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4V5H|1|AA|C|1054

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_048 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1158

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V5H|1|AA|U|1052
4V5H|1|AA|G|1053
4V5H|1|AA|C|1054
4V5H|1|AA|A|1055
4V5H|1|AA|U|1056
*
4V5H|1|AA|A|1204
4V5H|1|AA|U|1205
4V5H|1|AA|G|1206

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14

Chain AX

MRNA