IL_4V5H_057

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_057 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1826

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V5H|1|AA|C|1259
4V5H|1|AA|G|1260
4V5H|1|AA|A|1261
4V5H|1|AA|C|1262
4V5H|1|AA|C|1263
*
4V5H|1|AA|G|1272
4V5H|1|AA|C|1273
4V5H|1|AA|A|1274
4V5H|1|AA|A|1275
4V5H|1|AA|G|1276

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AN

30S RIBOSOMAL PROTEIN S14

Chain AS

30S RIBOSOMAL PROTEIN S19