IL_4V5H_062

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V5H|1|AA|A|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_062 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3839

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V5H|1|AA|C|1407
4V5H|1|AA|A|1408
4V5H|1|AA|C|1409
*
4V5H|1|AA|G|1491
4V5H|1|AA|A|1492
4V5H|1|AA|A|1493
4V5H|1|AA|G|1494

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AX

MRNA

Chain BB

Large subunit ribosomal RNA; LSU rRNA