IL_4V5H_079

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

4V5H|1|BB|A|101, 4V5H|1|BB|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_079 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.4492

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5H|1|BB|G|81
4V5H|1|BB|U|82
4V5H|1|BB|A|83
4V5H|1|BB|A|84
4V5H|1|BB|G|85
*
4V5H|1|BB|C|97
4V5H|1|BB|G|98
4V5H|1|BB|U|99
4V5H|1|BB|U|100
4V5H|1|BB|A|101
4V5H|1|BB|U|102
4V5H|1|BB|A|103
4V5H|1|BB|A|104
4V5H|1|BB|C|105

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L29

Chain BU

50S RIBOSOMAL PROTEIN L24