IL_4V5H_086

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V5H|1|BB|A|504, 4V5H|1|BB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_086 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.118

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V5H|1|BB|G|481
4V5H|1|BB|A|482
4V5H|1|BB|A|483
4V5H|1|BB|C|484
*
4V5H|1|BB|G|496
4V5H|1|BB|A|497
4V5H|1|BB|G|498
4V5H|1|BB|U|499
4V5H|1|BB|G|500
4V5H|1|BB|A|501
4V5H|1|BB|A|502
4V5H|1|BB|A|503
4V5H|1|BB|A|504
4V5H|1|BB|A|505
4V5H|1|BB|G|506
4V5H|1|BB|A|507
4V5H|1|BB|A|508
4V5H|1|BB|C|509

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

POLY-ALA NASCENT CHAIN

Chain BS

50S RIBOSOMAL PROTEIN L22

Chain BU

50S RIBOSOMAL PROTEIN L24