IL_4V5H_110

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_110 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1478

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4V5H|1|BB|U|1018
4V5H|1|BB|U|1019
4V5H|1|BB|A|1020
4V5H|1|BB|A|1021
4V5H|1|BB|G|1022
4V5H|1|BB|U|1023
4V5H|1|BB|G|1024
*
4V5H|1|BB|C|1140
4V5H|1|BB|U|1141
4V5H|1|BB|A|1142
4V5H|1|BB|A|1143
4V5H|1|BB|A|1144

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L36

Chain BG

50S RIBOSOMAL PROTEIN L6

Chain BJ

50S RIBOSOMAL PROTEIN L13