IL_4V5H_116

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V5H|1|BB|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_116 not in the Motif Atlas

Geometric match to IL_4LFB_024

Geometric discrepancy: 0.2592

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4V5H|1|BB|G|1087
4V5H|1|BB|A|1088
4V5H|1|BB|A|1089
4V5H|1|BB|A|1090
*
4V5H|1|BB|U|1101
4V5H|1|BB|C|1102

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L36

Chain BI

50S RIBOSOMAL PROTEIN L11