IL_4V5H_136

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_136 not in the Motif Atlas

Homologous match to IL_5J7L_306

Geometric discrepancy: 0.0828

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V5H|1|BB|G|1666
4V5H|1|BB|G|1667
4V5H|1|BB|A|1668
4V5H|1|BB|A|1669
*
4V5H|1|BB|U|1993
4V5H|1|BB|C|1994

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L3

Chain BK

50S RIBOSOMAL PROTEIN L14