IL_4V5H_163

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

4V5H|1|BB|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_163 not in the Motif Atlas

Homologous match to IL_7RQB_090

Geometric discrepancy: 0.3511

The information below is about IL_7RQB_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V5H|1|BB|U|2401
4V5H|1|BB|U|2402
4V5H|1|BB|C|2403
*
4V5H|1|BB|G|2414
4V5H|1|BB|G|2415

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S RIBOSOMAL PROTEIN L33

Chain B7

50S RIBOSOMAL PROTEIN L35

Chain BL

50S RIBOSOMAL PROTEIN L15