IL_4V5J_003

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4V5J|1|AA|C|48, 4V5J|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_003 not in the Motif Atlas

Homologous match to IL_4LFB_003

Geometric discrepancy: 0.0934

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4V5J|1|AA|C|47
4V5J|1|AA|C|48
4V5J|1|AA|U|49
4V5J|1|AA|A|50
4V5J|1|AA|A|51
4V5J|1|AA|G|52
*
4V5J|1|AA|U|359
4V5J|1|AA|A|360
4V5J|1|AA|G|361

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain DI

50S RIBOSOMAL PROTEIN L9