IL_4V5J_052
3D structure
- PDB id
- 4V5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5J_052 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1511
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5J|1|AA|G|1401
4V5J|1|AA|C|1402
4V5J|1|AA|C|1403
4V5J|1|AA|C|1404
*
4V5J|1|AA|G|1497
4V5J|1|AA|U|1498
4V5J|1|AA|A|1499
4V5J|1|AA|A|1500
4V5J|1|AA|C|1501
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain AX
- MRNA
- Chain AY
- PEPTIDE CHAIN RELEASE FACTOR 2
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: