IL_4V5J_132

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_132 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1349

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V5J|1|BA|G|1856
4V5J|1|BA|G|1857
4V5J|1|BA|G|1858
4V5J|1|BA|A|1859
4V5J|1|BA|G|1860
*
4V5J|1|BA|C|1882
4V5J|1|BA|G|1883
4V5J|1|BA|A|1884
4V5J|1|BA|A|1885
4V5J|1|BA|C|1886

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BC

50S RIBOSOMAL PROTEIN L1