IL_4V5J_329

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

4V5J|1|DA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5J_329 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.2535

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V5J|1|DA|C|2652
4V5J|1|DA|U|2653
4V5J|1|DA|A|2654
4V5J|1|DA|G|2655
4V5J|1|DA|U|2656
4V5J|1|DA|A|2657
4V5J|1|DA|C|2658
*
4V5J|1|DA|G|2663
4V5J|1|DA|G|2664
4V5J|1|DA|A|2665
4V5J|1|DA|C|2666
4V5J|1|DA|C|2667
4V5J|1|DA|G|2668

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L6