IL_4V5K_009

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V5K|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0864

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4V5K|1|AA|G|148
4V5K|1|AA|A|149
4V5K|1|AA|C|150
4V5K|1|AA|A|151
4V5K|1|AA|A|152
4V5K|1|AA|C|153
*
4V5K|1|AA|G|168
4V5K|1|AA|C|169
4V5K|1|AA|U|170
4V5K|1|AA|A|171
4V5K|1|AA|A|172
4V5K|1|AA|U|173
4V5K|1|AA|C|174

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20