3D structure

PDB id
4V5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGCAU*AUGG
Length
10 nucleotides
Bulged bases
4V5K|1|AA|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5K_040 not in the Motif Atlas
Geometric match to IL_4V88_473
Geometric discrepancy: 0.3827
The information below is about IL_4V88_473
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

4V5K|1|AA|C|1051
4V5K|1|AA|U|1052
4V5K|1|AA|G|1053
4V5K|1|AA|C|1054
4V5K|1|AA|A|1055
4V5K|1|AA|U|1056
*
4V5K|1|AA|A|1204
4V5K|1|AA|U|1205
4V5K|1|AA|G|1206
4V5K|1|AA|G|1207

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AC
30S RIBOSOMAL PROTEIN S3
Chain AJ
30S RIBOSOMAL PROTEIN S10
Chain AN
30S RIBOSOMAL PROTEIN S14 TYPE Z
Chain AX
MRNA
Chain AY
COLICIN-E3

Coloring options:


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