IL_4V5K_048

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V5K|1|AA|C|1400, 4V5K|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_048 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2095

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V5K|1|AA|C|1399
4V5K|1|AA|C|1400
4V5K|1|AA|G|1401
*
4V5K|1|AA|C|1501
4V5K|1|AA|A|1502
4V5K|1|AA|A|1503
4V5K|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AX

MRNA

Chain AY

COLICIN-E3