IL_4V5K_072

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_072 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.0995

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V5K|1|BA|U|606
4V5K|1|BA|U|607
4V5K|1|BA|A|608
4V5K|1|BA|A|609
4V5K|1|BA|G|610
*
4V5K|1|BA|C|618
4V5K|1|BA|G|619
4V5K|1|BA|G|620
4V5K|1|BA|A|621
4V5K|1|BA|G|622

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BP

50S RIBOSOMAL PROTEIN L15