IL_4V5K_088

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_088 not in the Motif Atlas

Geometric match to IL_4LFB_004

Geometric discrepancy: 0.2427

The information below is about IL_4LFB_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4V5K|1|BA|U|877
4V5K|1|BA|A|878
4V5K|1|BA|G|879
*
4V5K|1|BA|C|898
4V5K|1|BA|A|899

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L25