IL_4V5K_100

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V5K|1|BA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_100 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0931

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V5K|1|BA|C|1208
4V5K|1|BA|G|1209
4V5K|1|BA|A|1210
4V5K|1|BA|U|1211
4V5K|1|BA|G|1212
4V5K|1|BA|A|1213
4V5K|1|BA|A|1214
4V5K|1|BA|G|1215
*
4V5K|1|BA|U|1234
4V5K|1|BA|G|1235
4V5K|1|BA|G|1236
4V5K|1|BA|A|1237
4V5K|1|BA|G|1238

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S RIBOSOMAL PROTEIN L20