IL_4V5K_104

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

4V5K|1|BA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_104 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0726

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V5K|1|BA|G|1319
4V5K|1|BA|C|1320
4V5K|1|BA|A|1321
4V5K|1|BA|A|1322
4V5K|1|BA|U|1323
*
4V5K|1|BA|A|1331
4V5K|1|BA|G|1332
4V5K|1|BA|C|1333

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L22