IL_4V5K_157

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_157 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0944

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V5K|1|BA|U|2847
4V5K|1|BA|G|2848
4V5K|1|BA|U|2849
4V5K|1|BA|A|2850
4V5K|1|BA|A|2851
4V5K|1|BA|G|2852
*
4V5K|1|BA|U|2865
4V5K|1|BA|U|2866
4V5K|1|BA|G|2867
4V5K|1|BA|A|2868
4V5K|1|BA|G|2869

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BT

50S RIBOSOMAL PROTEIN L19