IL_4V5K_172

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V5K|1|CA|U|244, 4V5K|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_172 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.088

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V5K|1|CA|C|242
4V5K|1|CA|A|243
4V5K|1|CA|U|244
4V5K|1|CA|C|245
4V5K|1|CA|A|246
4V5K|1|CA|G|247
*
4V5K|1|CA|C|277
4V5K|1|CA|G|278
4V5K|1|CA|A|279
4V5K|1|CA|C|280
4V5K|1|CA|G|281
4V5K|1|CA|A|282
4V5K|1|CA|C|283
4V5K|1|CA|G|284

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17